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Table 5 Atoms used in the calculation of the contact measure

From: An effective all-atom potential for proteins

Residue

Set of atoms (A I )

Arg

N ϵ , C ζ , Nη1, Nη2

Lys

1H ζ , 2H ζ , 3H ζ

Asp

Oδ1, Oδ2

Glu

Oϵ1, Oϵ2

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PMC Biophysics

ISSN: 1757-5036