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Table 4 Atoms used in the calculation of the contact measure

From: An effective all-atom potential for proteins

Residue

Set of atoms (A I )

Pro

C β , C γ , C δ

Tyr

C γ , Cδ1, Cδ2, Cϵ1, Cϵ2, C ζ

Val

C β , Cγ1, Cγ2

Ile

C β , Cγ1, Cγ2, C δ

Leu

C β , C γ , Cδ1, Cδ2

Met

C β , C γ , S δ , C ϵ

Phe

C γ , Cδ1, Cδ2, Cϵ1, Cϵ2, C ζ

Trp

C γ , Cδ1, Cδ2, Cϵ3, Cζ3, Cη2

Arg

C β , C γ

Lys

C β , C γ , C δ